International Journal of Insects Review Article

The Insect Microbiome: Reviewing the Mutualistic Ties Between Insects and Microbes

  1. Mukesh Chander Department of Biotechnology, Khalsa University, Amritsar
  2. Rajiv Kumar School of Pharmacy, Khlasa University, Amritsar

Abstract

Insects are the most diverse and abundant class of animals on Earth, occupying virtually every terrestrial and freshwater ecological niche. A primary engine driving their evolutionary radiation, nutritional versatility, and physiological resilience is their intimate association with microbial symbionts. The insect microbiome, comprising bacteria, fungi, viruses, and protists, spans a continuum from transient environmental commensals to obligate intracellular mutualists. This review comprehensively synthesizes current knowledge on the functional architecture, transmission fidelity, and evolutionary ecology of mutualistic ties between insects and microbes. The present paper examines the primary functional axes of insect-microbe mutualisms: metabolic complementation in nutrient-poor diets, lignocellulose deconstruction in wood and litter feeders, xenobiotic detoxification (phytotoxins and synthetic insecticides), immune modulation, protection against natural enemies, and behavioral manipulation. Furthermore, in this context, the study will analyze how environmental variables, dietary shifts, and seasonal dynamics shape the stability and composition of the insect microbiome across generations. Integrating evidence from multi-omics analyses, culturable isolation experiments, and reverse genetics, this article provides a detailed synthesis of insect-microbe mutualisms and explores emerging biotechnological applications, such as probiotic interventions for mass-reared insects and paratransgenesis for agricultural and vector management.

Keywords

References (28)

  1. Holt, J. R., Medina, R. F., Malacrinò, A., & I Lindsey, A. R. (2024). Insect–microbe interactions and their influence on organisms and ecosystems. Ecology and Evolution, 14(7), e11699. https://doi.org/10.1002/ece3.11699
  2. Ishigami, K., Jang, S., Itoh, H., & Kikuchi, Y. (2021). Insecticide resistance governed by gut symbiosis in a rice pest, Cletus punctiger, under laboratory conditions. Biology letters, 17(3), 20200780. https://doi.org/10.1098/rsbl.2020.0780
  3. Chen, H., Hao, D., Chen, C., Sun, Y., & Yu, X. (2023). Effects of midgut bacteria in Hyphantria cunea (Lepidoptera: Erebidae) on nuclear polyhedrosis virus and Bacillus thuringiensis (Bacillales: Bacillaceae). Journal of Insect Science, 23(2), 1. https://doi.org/10.1093/jisesa/iead009
  4. Roy, A., Houot, B., Kushwaha, S., & Anderson, P. (2023). Impact of transgenerational host switch on gut bacterial assemblage in generalist pest, Spodoptera littoralis (Lepidoptera: Noctuidae). Frontiers in Microbiology, 14, 1172601. https://doi.org/10.3389/fmicb.2023.1172601
  5. Chander, M. (2026). Marine Microbial Ecology: A Comprehensive Review of Interactions, Symbiosis, and Bioprospecting. International Journal of Marine Life. 3 (1). 6-16. https://doi.org/10.37591/IJML.v03i01.239774
  6. Rocabert, A., Pareras, L., Egea, R., Alaraby, M., Rubio, L., Marcos, R., García-Rodríguez, A., & Hernández, A. (2026). Life-Stage–Dependent Variation in Gastrointestinal Microbial Communities of Drosophila melanogaster. Microbial Ecology, 89(1), 110. https://doi.org/10.1007/s00248-026-02757-8
  7. Rampal, P., & Chander, M. (2026). Marine Fungi: An Expandable Source for the Production of Novel Bioactive Metabolites – A Comprehensive Review. International Journal of Fungi. 03 (1). 30-37. https://doi.org/ 10.37591/IJF
  8. Chen, S., Zhou, A., & Xu, Y. (2023). Symbiotic bacteria regulating insect–insect/fungus/virus mutualism. Insects, 14(9), 741. https://doi.org/10.3390/insects14090741
  9. Gupta, A., & Nair, S. (2020). Dynamics of insect–microbiome interaction influence host and microbial symbiont. Frontiers in Microbiology, 11, 1357. https://doi.org/10.3389/fmicb.2020.01357
  10. Itoh, H., Tago, K., Hayatsu, M., & Kikuchi, Y. (2018). Detoxifying symbiosis: Microbe- mediated detoxification of phytotoxins and pesticides in insects. Natural Product Reports, 35(5), 434–454. https://doi.org/10.1039/c7np00051k
  11. Chander, M., Arora, D.S., & Kaur, R. (2014). Decolorization of reactive red 28, an industrial dye. Journal of Environmental Biology, 35. 1031-1036.
  12. Lemoine, M. M., Wöhner, T., & Kaltenpoth, M. (2025). Microbial community dynamics in natural Drosophila melanogaster populations across seasons. Environmental Microbiology, 27(6), e70104. https://doi.org/10.1111/1462-2920.70104
  13. Riedel, E. K., & Rohlfs, M. (2026). A dataset on habitat-associated changes in the fecal microbiota of Drosophila melanogaster. Scientific Data, 13(1), 948. https://doi.org/10.1038/s41597-026-07673-7
  14. Li, X. (2026). Insect gut microbiota—Research strategies and perspectives. MDPI Insects, 17(4), 367. https://doi.org/10.3390/insects17040367
  15. Adair, K. L., & Douglas, A. E. (2017). Making a microbiome: The many determinants of host-associated microbial community composition. Current Opinion in Microbiology, 35, 23-29. https://doi.org/10.1016/j.mib.2016.11.002
  16. Arora, D.S., & Chander, M. (2005). Biotechnological applications of white–rot fungi in biodegradation of various pollutants. In: Varma, A. And Podila G.K.(eds.), Biotechnological Applications of Microbes. I.K. International, New Delhi. P 263–280. https://doi.org.10.13140/RG.2.1.2022.8562
  17. Engel, P., & Moran, N. A. (2013). The gut microbiota of insects – diversity in structure and function. FEMS Microbiology Reviews, 37(5), 699-735. https://doi.org/10.1111/1574-6976.12025
  18. Mondal, S., Somani, J., Roy, S., Babu, A., & Pandey, A. K. (2023). Insect microbial symbionts: Ecology, interactions, and biological significance. Microorganisms, 11(11), 2665. https://doi.org/10.3390/microorganisms11112665
  19. Roy, A., Houot, B., Kushwaha, S., & Anderson, P. (2023). Impact of transgenerational host switch on gut bacterial assemblage in generalist pest, Spodoptera littoralis (Lepidoptera: Noctuidae). Frontiers in Microbiology, 14, 1172601. https://doi.org/10.3389/fmicb.2023.1172601
  20. Sato, Y., Jang, S., Takeshita, K., Itoh, H., Koike, H., Tago, K., Hayatsu, M., Hori, T., & Kikuchi, Y. (2021). Insecticide resistance by a host-symbiont reciprocal detoxification. Nature Communications, 12, 6432. https://doi.org/10.1038/s41467-021-26649-2
  21. Savio, C., Mugo-Kamiri, L., & Upfold, J. K. (2022). Bugs in bugs: The role of probiotics and prebiotics in maintenance of health in mass-reared insects. Insects, 13(4), 376.https://doi.org/10.3390/insects13040376
  22. Xie, R., Dong, C., Wang, S., Danso, B., Dar, M. A., Pandit, R. S., Pawar, K. D., Geng, A., Zhu, D., Li, X., Xu, Q., & Sun, J. (2023). Host-specific diversity of culturable bacteria in the gut systems of fungus-growing termites and their potential functions towards lignocellulose bioconversion. Insects, 14(4), 403. https://doi.org/10.3390/insects14040403
  23. Chander, M., Kaur, J. 2024. Aquatic Ecosystems: A Review on Prospecting of AnticancerMolecules from Fungi & Other Microbes. International Journal of Fungi. 2024; 1 (2).ISSN: 3049-1509 https://journals.stmjournals.com/ijf/article=2024/view=172169
  24. Peterson, D. B., Kreutz, R., Jackson, P., Pech-Gonzalez, H. O., Moon, J. K., Chan, J.,Wilcox, S., Beltz, J., Schmidt, P., & Chaston, J. M. (2025). The microbiota elicits compensatory adaptation in a seasonally-adapting animal host. BioRxiv, 2025.10.14.682128. https://doi.org/10.1101/2025.10.14.682128
  25. Alonso-Pernas, P., Arias-Cordero, E., Novoselov, A., Ebert, C., Rybak, J., Kaltenpoth, M., Westermann, M., Neugebauer, U., & Boland, W. (2017). Bacterial Community and PHB- Accumulating Bacteria Associated with the Wall and Specialized Niches of the Hindgut of the Forest Cockchafer (Melolontha hippocastani). Frontiers in Microbiology, 8, 291. https://doi.org/10.3389/fmicb.2017.00291
  26. Liberti, J., & Engel, P. (2020). The gut microbiota - Brain axis of insects. Current Opinion in Insect Science, 39, 6-13. https://doi.org/10.1016/j.cois.2020.01.004
  27. Nowak, A., Szczuka, D., Górczyńska, A., Motyl, I., & Kręgiel, D. (2021). Characterization of Apis mellifera Gastrointestinal Microbiota and Lactic Acid Bacteria for Honeybee Protection-A Review. Cells, 10(3), 701. https://doi.org/10.3390/cells10030701
  28. Bonilla-Rosso, G., & Engel, P. (2018). Functional roles and metabolic niches in the honey bee gut microbiota. Current Opinion in Microbiology, 43, 69-76. https://doi.org/10.1016/j.mib.2017.12.009
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