Network analysis
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Intrinsic Evaluation of Graph Embeddings: Assessing Clustering and Community Detection Performance
Abstract: This paper presents an intrinsic evaluation of some graph embedding techniques on clustering and community detection tasks. We analyze a diverse set of embedding methods, ranging from traditional techniques such as Laplacian eigenmaps to more recent approaches like graph autoencoders, high-order proximity preserved embedding (HOPE), and graph attention network (GAT), using two widely studied datasets, Cora and CiteSeer. Our evaluation relies on two main metrics: Silhouette score with respect to …
Published in International Journal of Algorithms Design and Analysis Review · Vol. 3, Issue 1, 2025 · pp. 40–48 Read article
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Gene prioritization of colorectal cancer using computational approach
Abstract: Colorectal cancer (CRC) continues to be a major worldwide health issue, underscoring the need to pinpoint crucial genetic elements influencing its initiation and advancement. In this investigation, we utilize sophisticated computational methods to prioritize potential genes linked to CRC development. Through the utilization of various bioinformatics tools and comprehensive methodologies, we systematically examine extensive microarray datasets to identify potential genetic contributors. Initially, a vast amount of CRC microarray data (approximately …
Published in International Journal of Bioinformatics and Computational Biology · Vol. 2, Issue 1, 2024 · pp. 39–52 Read article